PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009082m
Common NameEUTSA_v10009082mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 136aa    MW: 15814.6 Da    PI: 4.0237
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009082mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-16998198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     f+k +   +  +s  l +p  f e +   ++ + t+ l d  grsW++++  ++ +++++lt GW++Fvk+n+L++g ++ F +d +++f  +v +
  Thhalv10009082m  9 FIKPF--ISEKSSESLEIPLGFNEYFP--HPLPNTVELLDYCGRSWTIRM--KRIGDKVFLTVGWENFVKENNLEDGKMMNFIYDCNRTF--HVII 96
                     66777..455566669******85445..45899****************..********************************987777..8888 PP

                     E- CS
               B3 97 fr 98
                     f 
  Thhalv10009082m 97 FG 98
                     76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-214100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-227100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.4517100IPR003340B3 DNA binding domain
PfamPF023627.0E-14997IPR003340B3 DNA binding domain
SMARTSM010191.5E-149100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAATNEESFI KPFISEKSSE SLEIPLGFNE YFPHPLPNTV ELLDYCGRSW TIRMKRIGDK  60
VFLTVGWENF VKENNLEDGK MMNFIYDCNR TFHVIIFGHH GVSEFIDFPQ VVMDVDEYET  120
CEEEEEEEDD NNISN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A8e-5311003102At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009082m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416796.12e-96B3 domain-containing protein At1g16640
SwissprotQ9FX771e-58Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLV4KUZ65e-95V4KUZ6_EUTSA; Uncharacterized protein
STRINGXP_006416796.18e-96(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-60B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]