PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009291m
Common NameEUTSA_v10009291mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 434aa    MW: 50718.4 Da    PI: 6.5433
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009291mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54e-12165190227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + + Cr++a++G C+yG++C+F+H+p
  Thhalv10009291m 165 GVADCRHYAKNGLCSYGSKCHFNHPP 190
                      7899********************97 PP
2zf-CCCH31.82.4e-10199223227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      k+  C+ff++ G+Ck+G++C+++H++
  Thhalv10009291m 199 KMQDCKFFLK-GYCKFGSSCSYIHSK 223
                      8899******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-6163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028163191IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9165190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5166190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5169190IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6197223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6197222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.159197224IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8199223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6200224IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MTDEIVERFK RAKKEKAIPD SRGPERFRDI TQKTQIHDEI VEGYRRARKE NRSVNAQENQ  60
RQRNIEMQRK EDEESVEEQI LKGRKPDLGP SETEERTNRR HERDPRSWGE KRENEDSGLR  120
INEAGQVRES DADIAGNLQQ KRLGGGEMQR RSNETGSSQY PVRPGVADCR HYAKNGLCSY  180
GSKCHFNHPP HLSPAFPKKM QDCKFFLKGY CKFGSSCSYI HSKEKDVAAE PMPQAQARAI  240
PDSQERDPRE FFQYVTDDTA VDYKRVGIEH EGEILLGWQR MEAEDIVQEQ RQAQEIVQEQ  300
RQAQFNVQRE VEESVEERIM RVNKLKQDSD SENVEKERQI EIQRKKKEER LKLDQIEETA  360
KSNIWNRMQI IGVRDPAGTE SKEKKPARDI ESERRESRLK LEQMKPTVQF NEGDRVRDVL  420
TELGFERKEG DGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009291m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007988.10.0putative zinc finger CCCH domain-containing protein 9
TrEMBLV4K8E30.0V4K8E3_EUTSA; Uncharacterized protein
STRINGXP_006415562.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.12e-22C3H family protein