PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009328m
Common NameEUTSA_v10009328mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 245aa    MW: 27638.7 Da    PI: 4.838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009328mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-183887255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a+++a+++++g
  Thhalv10009328m 38 KYLGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 87
                     799******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.05E-213896IPR016177DNA-binding domain
PfamPF008472.4E-123887IPR001471AP2/ERF domain
PROSITE profilePS5103221.1533895IPR001471AP2/ERF domain
SMARTSM003803.0E-3238101IPR001471AP2/ERF domain
CDDcd000181.14E-303894No hitNo description
Gene3DG3DSA:3.30.730.103.6E-283895IPR001471AP2/ERF domain
PRINTSPR003674.1E-93950IPR001471AP2/ERF domain
PRINTSPR003674.1E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEFNGSSNAG SSSRSKKSHR QKQQQLQPQP QQHNEEIKYL GVRRRPWGRY AAEIRNPTTK  60
ERYWLGTFDT AEEAALAYDR AARSIRGLTA RTNFVYSDMP RGSSVTSFIS PDESQRFISE  120
LFNLPNQQEA LNNNNNNNLY SSASNQNQNH NSSEFSYNGW PQETECGYNS INNDEHCDHE  180
LPPLPPSTCF GAELRIPETD SYWNAAHASI DTFSFELDGF VDQNSLGQSG TEGFDSSSST  240
FFFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1835941171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009328m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4462950.0DQ446295.1 Arabidopsis thaliana clone pENTR221-At1g28160 ethylene-responsive element-binding family protein (At1g28160) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415689.10.0ethylene-responsive transcription factor ERF087
SwissprotQ9FZ901e-140ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLV4KVK20.0V4KVK2_EUTSA; Uncharacterized protein
STRINGXP_006415689.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-111ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]