PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009376m
Common NameEUTSA_v10009376mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 377aa    MW: 42879.8 Da    PI: 8.7412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009376mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-065577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  Thhalv10009376m 55 YVCEICNQGFQRDQNLQMHRRRH 77
                     9*********************9 PP
2zf-C2H214.88.4e-05134156123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k +  +s++k H++t+
  Thhalv10009376m 134 WVCERCSKGYAVQSDYKAHLKTC 156
                      58*******************98 PP
3zf-C2H211.20.0011164182523
                      TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                      dCg++Fsr +++  H+ t+
  Thhalv10009376m 164 DCGRVFSRVESFIEHQDTC 182
                      9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-55278No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0185573No hitNo description
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975577IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035516098128IPR015880Zinc finger, C2H2-like
SMARTSM0035594134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MIDYEKNNNH GNFPSSSSSD LILTINGAST TNKRKHPDAE VVSLSPRTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKREKKD EKVRKRVYVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSV FKQWVCERCS KGYAVQSDYK AHLKTCGSRG HSCDCGRVFS RVESFIEHQD  180
TCTFRQPPPT NYRPQQQTAS PAAPSRTFLT SSIGPLLHGL PLLRPPLPDQ HSLTYAYPFN  240
ASSTPFESLE LQLSMGMMRT SAQVNINEKG ETSLTKEGSN EEARKADQMR QEAKRQIEMA  300
EADFEKAKRI RKEAKAEMEK AHVVREEAIK RINATMLEIT CHSCRQLFQI PVMADEITSS  360
LVMSYVSSAT TEGECE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-17132182555Zinc finger protein JACKDAW
5b3h_F4e-17132182555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009376m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934760.0AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008661.10.0protein indeterminate-domain 16
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLV4MR370.0V4MR37_EUTSA; Uncharacterized protein
STRINGXP_006415838.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.10.0indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]