PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10009386m

Common Name

EUTSA_v10009386mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 167aa MW: 18655.5 Da PI: 9.4726

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009386m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.1	3.5e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC+kdCv+apyfpa++p kfa+vhk+FGasnv k+l+ l+e++r+da++s+vyeA+ar++dPvyG+vg+i++l++qle+l+++l Thhalv10009386m 14 PCAACKLLRRKCVKDCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQMLSENHRSDAVNSMVYEANARVQDPVYGCVGTISSLHRQLETLQTQL 107 7********************************************************************************************* PP DUF260 95 allkee 100 a +++e Thhalv10009386m 108 AFAQAE 113 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.19	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MRQKGHRHAG AVSPCAACKL LRRKCVKDCV FAPYFPAKEP YKFAIVHKIF GASNVNKMLQ 60 MLSENHRSDA VNSMVYEANA RVQDPVYGCV GTISSLHRQL ETLQTQLAFA QAELVHIRTL 120 RRIESIRTKP APYTASMGTF PANKDFSTDV DMAFVYEDGA RESLWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	10	115	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	10	115	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009386m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473842	1e-135	AB473842.1 Arabidopsis thaliana ASL9 mRNA for ASYMMETRIC LEAVES2-like 9 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416807.1	1e-124	LOB domain-containing protein 3
Swissprot	Q9SA51	1e-100	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	V4KBS8	1e-123	V4KBS8_EUTSA; Uncharacterized protein
STRING	XP_006416807.1	1e-123	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	1e-102	ASYMMETRIC LEAVES 2-like 9

Link Out ? help Back to Top
Phytozome	Thhalv10009386m
Entrez Gene	18993239

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]