PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009402m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 188aa    MW: 20531.2 Da    PI: 5.8459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009402mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-183888155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  Thhalv10009402m 38 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAALCLKG 88
                     68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-123888IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-203997IPR016177DNA-binding domain
SMARTSM003804.2E-3439102IPR001471AP2/ERF domain
PROSITE profilePS5103222.9853996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-303997IPR001471AP2/ERF domain
PRINTSPR003675.6E-124051IPR001471AP2/ERF domain
CDDcd000186.88E-304097No hitNo description
PRINTSPR003675.6E-127898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKLSPPPLTN NESTAAASAV KSCGGGGRRE TSSTTRHPVY HGVRKRRWGK WVSEIREPRK  60
KSRIWLGSFP VPEMAAKAYD VAALCLKGRK AQLNFPEEID DLPRPSTCTA RDIQVAAAKA  120
ANAVKIIKTG DDDVADIDNG DDFWEGIELP ELMMTGGGWS PEPFVAGEDP TWMVDGDSYQ  180
YQFMACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16371001276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009402m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531060.0AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418405.21e-138ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-116ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLE4MX591e-137E4MX59_EUTHA; mRNA, clone: RTFL01-20-O04
STRINGXP_006418405.11e-137(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.16e-94ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]