PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009416m
Common NameEUTSA_v10009416mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 224aa    MW: 25547.1 Da    PI: 10.0679
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009416mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer76.92.8e-2460111357
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                      k rY eC kN+A  +G++a+DGCgEf++++      ++++CaACgCHR+FHR e+
  Thhalv10009416m  60 KSRYGECVKNQASGIGTTAYDGCGEFVSATAG---EDSMNCAACGCHRSFHREES 111
                      789*************************9444...69***************986 PP
2Homeobox14.56e-05165222154
                      TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl...gLterqVkvWFqNrRak 54 
                      +r +t+ft+eq+e + ++ ek   ++s e+re   k +   g++ +++ vW  N++ k
  Thhalv10009416m 165 KRLKTKFTAEQTEKMRNYAEKlRWKVSPESREAVEKFCveiGVNRKKIMVWMNNHKDK 222
                      6889***************9987888888888887777777**************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.4E-2061111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-2262110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.47763110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-1563108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.53E-14156222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-22158222IPR009057Homeodomain-like
PROSITE profilePS500718.568162223IPR001356Homeobox domain
TIGRFAMsTIGR015653.9E-28165221IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDEKRSSKKR EKRRKRNKAK AICRETGDHV HYPPTRPPKS TRPRHAPSPI LESIFQLARK  60
SRYGECVKNQ ASGIGTTAYD GCGEFVSATA GEDSMNCAAC GCHRSFHREE SLSGGILEEL  120
NLTPHQFRQI FCSPYGERKD EGKKRIVMDR SGGDDLVEEG EGRVKRLKTK FTAEQTEKMR  180
NYAEKLRWKV SPESREAVEK FCVEIGVNRK KIMVWMNNHK DKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-131642211774ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009416m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416476.11e-167zinc-finger homeodomain protein 13
SwissprotQ9FMY78e-90ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLV4KU331e-165V4KU33_EUTSA; Uncharacterized protein
STRINGXP_006416476.11e-166(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.13e-76homeobox protein 27