PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009432m
Common NameEUTSA_v10009432mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 317aa    MW: 35824.8 Da    PI: 7.0979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009432mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.24.8e-12174199126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF H+
  Thhalv10009432m 174 YQPDICKDYKETGYCGYGDSCKFLHD 199
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9172205IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009173201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-13174204IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10174199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.1E-13234296IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.77E-13250293No hitNo description
PfamPF139209.2E-9250292No hitNo description
CDDcd001621.98E-8251292No hitNo description
SMARTSM001849.2E-5251288IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.63251289IPR001841Zinc finger, RING-type
PROSITE patternPS005180266275IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
CTFFKKPSKA KNIRKRTADA DDEEDGDSKS ESSILHNLKK FAKPDSKLFF SSGPSKSSAA  60
TTSEAPEKAV FHYDSSKEIQ VQNDSRATAT LETETDFNQD ARAIRERVLK RADEALKGNK  120
KNASDEKLYT GIHGYTDHKA GFRREQTISS EKAGGSHGPL RASAHIRVSA RFDYQPDICK  180
DYKETGYCGY GDSCKFLHDR GDYKPGWQIE KEWEEAEKVR KRNKAMGVED EDDDDADNNS  240
DEDEDALPFA CFICREPFVD PVVTKCKHYF CEHCALKHHT KNKKCFVCNQ PTLGIFNAAH  300
EIKKRMAEER RKAEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-65131515326RING finger protein 113A
5z58_M3e-65131515326RING finger protein 113A
6ff4_t3e-65131515326RING finger protein 113A
6ff7_t3e-65131515326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009432m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418415.20.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLV4LAH50.0V4LAH5_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006418415.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein