PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009500m
Common NameEUTSA_v10009500mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 351aa    MW: 39921.6 Da    PI: 10.2303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009500mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.14.9e-16221001196
                      HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + s+ l +p +f+++h +g ++++kt +l++  s ++W+vk+  ++ +    +t+GW++F+ a++L+ gD+++F+++g++ f  +v++
  Thhalv10009500m  22 FHSH-LNMPVSFFSKHvEGRHNQNKTAKLRSdASEKTWSVKM--DGLK----FTDGWEDFAVAHDLRIGDIIIFRHEGDMVF--HVTA 100
                      4455.999*********8889999******97889*******..6666....************************999999..7765 PP
2B366.34.3e-21161253599
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++++l+ +rl+lp+ fa+++g++k ++ ++ l +e+grsW+++l+y+  + +++++ GW++F+ +ng+k+g   +Fkl++ +++ +v++++r
  Thhalv10009500m 161 KVSASSLEMDRLYLPRIFARSNGLDKMSGEKILLLNEEGRSWNLNLKYNEAGMHTFIRPGWRRFCAQNGMKQGHY-TFKLVQ-KSGPPVIRLCR 252
                      457889999****************************************************************96.****98.8999*****99 PP

                      S CS
               B3  99 k 99 
                      +
  Thhalv10009500m 253 A 253
                      5 PP
3B352.77.8e-17262350898
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++l +++ +lp  f++ +g++k++  ++tl  e+g +  v l  +k+ g++ ++kGW+eF++a+g+k g+++v++l++++++++v+k++ 
  Thhalv10009500m 262 ESSLHHSCYYLPQGFTRLNGINKPG--KITLLGEDGVKKVVDLLQNKRTGTMRIGKGWREFCDAHGVKIGESFVLELIWEEKASPVLKFCT 350
                      556667779***********99766..7********999999988999999************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-228106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-209111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.87111104IPR003340B3 DNA binding domain
CDDcd100176.38E-171299No hitNo description
SMARTSM010199.7E-2314104IPR003340B3 DNA binding domain
PfamPF023622.2E-102496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18150251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-15151251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.296157254IPR003340B3 DNA binding domain
CDDcd100179.07E-15157252No hitNo description
SMARTSM010192.7E-22158254IPR003340B3 DNA binding domain
PfamPF023625.6E-20161253IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941255351IPR003340B3 DNA binding domain
SMARTSM010196.5E-15256351IPR003340B3 DNA binding domain
CDDcd100174.75E-13258340No hitNo description
Gene3DG3DSA:2.40.330.108.6E-15260349IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-16262350IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-16263349IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAGQSLHSPT KPHFFQPLLP GFHSHLNMPV SFFSKHVEGR HNQNKTAKLR SDASEKTWSV  60
KMDGLKFTDG WEDFAVAHDL RIGDIIIFRH EGDMVFHVTA LGPSCCEIQY TSSTSNETDG  120
NGDDQTNHIG NRTRVKRKRV KKNRRKKAES SSSDHSHFEA KVSASSLEMD RLYLPRIFAR  180
SNGLDKMSGE KILLLNEEGR SWNLNLKYNE AGMHTFIRPG WRRFCAQNGM KQGHYTFKLV  240
QKSGPPVIRL CRALHRAKTD QESSLHHSCY YLPQGFTRLN GINKPGKITL LGEDGVKKVV  300
DLLQNKRTGT MRIGKGWREF CDAHGVKIGE SFVLELIWEE KASPVLKFCT K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133146RVKRKRVKKNRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009500m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065352e-57AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence.
GenBankBT0029472e-57BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds.
GenBankCP0026842e-57CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009099.10.0B3 domain-containing protein REM17 isoform X1
SwissprotQ84WP31e-126REM17_ARATH; B3 domain-containing protein REM17
TrEMBLV4K9F80.0V4K9F8_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006415947.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-121B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]