PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10009504m

Common Name

EUTSA_v10009504mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 108aa MW: 12591.5 Da PI: 9.9825

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009504m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2e-19	18	100	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + F+vrk++ k++ n ++++ +vCskeg+r+e + k ++ +++ t++gCka+++ ++++g++++ +++++HnH+l+ Thhalv10009504m 18 YQKYGGKHSFDVRKQRRKTK--NATVVRLLYVCSKEGYRKEPTVK---KSYSQPITHCGCKAHMTSYLQRTGRYKIVSFDQNHNHDLV 100 9**********9986665..8889**********98766...999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-16	18	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
ELCIGMEFSF DETAYFSYQK YGGKHSFDVR KQRRKTKNAT VVRLLYVCSK EGYRKEPTVK 60 KSYSQPITHC GCKAHMTSYL QRTGRYKIVS FDQNHNHDLV KTPMKHC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009504m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014986.1	6e-60	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	V4K7G0	6e-75	V4K7G0_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006415162.1	1e-75	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6200	6	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-13	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10009504m
Entrez Gene	18991776