PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009600m
Common NameEUTSA_v10009600mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 453aa    MW: 50800.7 Da    PI: 8.9067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009600mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074396418123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F++   L  H r+H
  Thhalv10009600m 396 HECPICFRVFKSGQALGGHKRSH 418
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-5632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.42E-8731No hitNo description
PfamPF139123.3E-4932IPR007087Zinc finger, C2H2
SMARTSM003550.32931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.42E-882109No hitNo description
SMARTSM003550.02587109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76287114IPR007087Zinc finger, C2H2
PfamPF139125.8E-488111IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-488111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
PfamPF139123.9E-10396418IPR007087Zinc finger, C2H2
SMARTSM003550.14396418IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974396418IPR007087Zinc finger, C2H2
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEQCKERKFV CKFCSKRFAC GKSLGGHIRT HMNNENSVDS DEDEHNRFKT EENGGQSSYG  60
LRENPKKNKR FVDQREMMAM KHQQQLLRCR ECGKGFVSSK ALCGHMACHS EREKIVMDSQ  120
SDTEASSSPI RRRSKRVVKH HHKADDAFVD GQSDSASSDA SEIEPEQEEM ALSLMMLSRD  180
SSFKKGHNLV VNSLAESSDN NSVILETKSS SGEQLKMVNV KNVEESCKKE KHGGVDNNQL  240
RYGEDNGDIL YDSDNSDSGY FRNGPKKLDS DVSVDGLFRN TGFDNKSVMR FGSGLNSSTT  300
KQDKNLNRFR KEWSGSGSGS GRSSTKYDLR KSKRGFPCYG RKKIKYEFTE SVYDSGEHSL  360
ETDSCADTNR TIKIHSKSPM VVKKPSGGSK KKSKGHECPI CFRVFKSGQA LGGHKRSHFI  420
GNQEHRTLVI QHQVAHEMHT LIDLNLPAPI DE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009600m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415937.10.0uncharacterized protein LOC18992471
TrEMBLV4K9F00.0V4K9F0_EUTSA; Uncharacterized protein
STRINGXP_006415937.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein