PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009654m
Common NameEUTSA_v10009654mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 295aa    MW: 34583.4 Da    PI: 8.7604
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009654mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.8e-2062120356
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                      +R+++t+eq  +Lee++ + +r+p++++++e+A+kl    +++ ++V++WFqN++ +e+
  Thhalv10009654m  62 SRWNPTPEQMMVLEEVYSSgTRTPTTQQIQEIASKLqkygRIEGKNVFYWFQNHKSRER 120
                      7*****************99*************************************98 PP
2Wus_type_Homeobox111.44.9e-3661122364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        ++RW+PtpeQ+++Lee+y+sG+rtP++++iq+i+++L++yG+ie+kNVfyWFQN+k+Rer k
    Thhalv10009654m  61 QSRWNPTPEQMMVLEEVYSSGTRTPTTQQIQEIASKLQKYGRIEGKNVFYWFQNHKSRERLK 122
                        79**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.5E-456126IPR001356Homeobox domain
PROSITE profilePS5007111.59657122IPR001356Homeobox domain
SuperFamilySSF466891.92E-1258121IPR009057Homeodomain-like
CDDcd000868.39E-561120No hitNo description
PfamPF000464.8E-1862120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-862120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAYNKDLIPP LLLYSTNYTT SQTLAHCTKT LPRNTNDIRN EEQIITGSVR EPNKEREKYM  60
QSRWNPTPEQ MMVLEEVYSS GTRTPTTQQI QEIASKLQKY GRIEGKNVFY WFQNHKSRER  120
LKRRRSDQQG EVAINNVHEA ALRKGNVATG NKDSSSVLRR RGEQRVIHTK TCFTSLHTHP  180
QNNYFDNDGK TEDYERGLEE KEGKWRNQIN PINTSDSSSN YHVIITSKRR QEAEHHQYNM  240
NEEEETRKSR TLNLFPVIEN QEKPGATGFA EENTKPNQLC CNYYYYYEFM PLIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009654m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008066.10.0WUSCHEL-related homeobox 6
TrEMBLV4KVE20.0V4KVE2_EUTSA; Uncharacterized protein
STRINGXP_006416956.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-46WOX family protein