PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10009656m

Common Name

EUTSA_v10009656mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 88aa MW: 10266.2 Da PI: 12.0095

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009656m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	68.7	8.7e-22	2	41	13	52
RWP-RK 13 yFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +F+lpik+A++ L +c+TvLK+iCR+ G++RWPhR++ksl Thhalv10009656m 2 HFHLPIKQASRRLSLCPTVLKKICRRGGLNRWPHRRVKSL 41 8*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.562	1	61	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-18	2	41	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MHFHLPIKQA SRRLSLCPTV LKKICRRGGL NRWPHRRVKS LLSKFNSLKE VLRTATDPRV 60 RMRAEQELAR LEKRLSEICS GILRNYT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009656m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400142.1	1e-51	uncharacterized protein LOC18017367
TrEMBL	V4KWH4	3e-56	V4KWH4_EUTSA; Uncharacterized protein
STRING	XP_006416039.1	6e-57	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	4e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Thhalv10009656m
Entrez Gene	18992567