PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009669m
Common NameEUTSA_v10009669mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28438.3 Da    PI: 9.2742
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009669mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.8e-2084132149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                      k i+ +s+r+vtfskRr+g++KK  ELSvL++a++a i fs+ g++y++
  Thhalv10009669m  84 KEIQVDSKRHVTFSKRRKGLFKKSAELSVLTGAKIAAITFSKCGRIYTF 132
                      568889******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.07276136IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-2376135IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-2177154IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-167898IPR002100Transcription factor, MADS-box
PfamPF003197.5E-2086132IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-1698113IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-16113134IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNNYKFHFQE KLCRYIKPPI KNPNDNFIPP SRLVMEGARE TSSITYLTPT DQNQTPNALV  60
TQHKKELTTQ IPKTSRGRQK IEIKEIQVDS KRHVTFSKRR KGLFKKSAEL SVLTGAKIAA  120
ITFSKCGRIY TFGPVDTLID RYLRKSPVSL EVYHGEDAAE EEGNPWWERP VESVPEEDLE  180
EYMAALSLLR ENLGKRIIEM GNNTDRTVEN VPTWPNNMMG WKPTMDMQSL SLDNRMDGFT  240
QSRGGQNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009669m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416719.21e-159MADS-box transcription factor 23
TrEMBLV4KYJ40.0V4KYJ4_EUTSA; Uncharacterized protein
STRINGXP_006416719.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.15e-91M-type_MADS family protein