PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009734m
Common NameEUTSA_v10009734mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 505aa    MW: 55589.3 Da    PI: 8.2413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009734mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-057090323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++Cgk F r  nL+ H r H
  Thhalv10009734m 70 CEICGKGFQRDQNLQLHRRGH 90
                     *******************88 PP
2zf-C2H213.40.00024144166123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H +t+
  Thhalv10009734m 144 WKCEKCSKRYAVQSDWKAHSKTC 166
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.75E-66790No hitNo description
PROSITE profilePS5015711.4896890IPR007087Zinc finger, C2H2
SMARTSM003550.0766890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.75E-6139164No hitNo description
SMARTSM00355130144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MTAEDQTISS SGRYVKSSST TDYVDHHHEH ESCNPPLVKK KRNLPGNPDP EAEVIALSPK  60
TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT SKEVRKRVYV CPEKSCVHHH  120
PTRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS  180
RRDSFITHRA FCDALAEETA RLNAASHLKS LTSNNLNYHY LMGTLIPSPP PPSFPFGPPQ  240
PQPPLHHHHF PLATTTFDHQ QDVMKPASSL SLWMGGSINP HQVTIDDRIA PPHSPHEDYN  300
NWVFGIANKH GELITTSDSL ITHDTINIVV PSKENTNANA VTSLSVPSLF SSVDQITQDA  360
NAAVANMSAT ALLQKAAQMG ANSSSPDPTT TTTTCIDQST FLQSFASKMS DDQSQIVEDG  420
GSDKFFGLFG SNSVGLMSNN SGLHDIGNPR NGVTVVSGID ELQSYPWKRR RVDSGDAGGG  480
GQTRDFLGVG VQTMCHSSPT NGWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36140215372Zinc finger protein JACKDAW
5b3h_F9e-36140215372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1467471KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009734m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418198.10.0zinc finger protein MAGPIE
SwissprotQ9ZWA60.0IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLV4MW870.0V4MW87_EUTSA; Uncharacterized protein
STRINGXP_006418198.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.10.0C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]