PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009748m
Common NameEUTSA_v10009748mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 101aa    MW: 11302.8 Da    PI: 9.5117
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009748mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-071154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W  +a+ +g  ++++++ks++
  Thhalv10009748m 11 SWTSKQNKMFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKSHY 54
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.458458IPR017877Myb-like domain
SMARTSM007171.4E-6860IPR001005SANT/Myb domain
SuperFamilySSF466892.18E-121065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-41160IPR009057Homeodomain-like
PfamPF002499.5E-61154IPR001005SANT/Myb domain
CDDcd001671.47E-41854No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASSSMSSSS SWTSKQNKMF ERALAVYDKD TPDRWQNVAK AVGSKSAEEV KSHYDILLED  60
LMNIEQDLVP LPKYKTVDAG SKSRGINGFD LRLMKNMRIQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-303100293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009748m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190341e-121AK119034.1 Arabidopsis thaliana At1g19510 mRNA for putative myb-related protein, complete cds, clone: RAFL21-36-F10.
GenBankAY5195241e-121AY519524.1 Arabidopsis thaliana MYB transcription factor (At1g19510) mRNA, complete cds.
GenBankBT0056571e-121BT005657.1 Arabidopsis thaliana clone U51233 putative myb family transcription factor (At1g19510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416498.18e-69protein RADIALIS-like 5
SwissprotQ8GW751e-56RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLV4MST92e-67V4MST9_EUTSA; Uncharacterized protein
STRINGXP_006416498.13e-68(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.11e-57RAD-like 5