PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009819m
Common NameEUTSA_v10009819mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 153aa    MW: 17823.7 Da    PI: 9.9483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009819mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.00021561253
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                     r+  n rE+ RR ++++ f  L +++ +       +l   +   +A+ Y+ +
  Thhalv10009819m 15 RKQRNLREKDRRMHMKHLFYLLSSHVSPT-----HRLPVPQLIDQATSYMIQ 61
                     7889*********************9885.....356666666666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-101380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.1631362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-61579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEREISGEGS SLSLRKQRNL REKDRRMHMK HLFYLLSSHV SPTHRLPVPQ LIDQATSYMI  60
QLKEKIKYLK EKKKALLGEV ENHSEGSYLL PQLTFNSWDS TIQMNLIMDA NMKRVMLHEL  120
VSVFQEEGAQ AIIFRIGIDP SRIEERVRSI IF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924LREKDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009819m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009033.12e-93LOW QUALITY PROTEIN: transcription factor bHLH167
SwissprotF4I4E12e-73BH167_ARATH; Transcription factor bHLH167
TrEMBLV4L7Q41e-107V4L7Q4_EUTSA; Uncharacterized protein
STRINGXP_006417450.11e-108(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-62bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]