PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009875m
Common NameEUTSA_v10009875mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 143aa    MW: 16743.3 Da    PI: 10.4761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009875mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.8e-0672117655
                      HHHHH.HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerEr.rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      n  E+ + R+ i+s+feeL++l P++     +K +   iL  ++eY k Lq
  Thhalv10009875m  72 NLLEKkKKRELIRSKFEELKQLTPNC-----PKSDILCILDSVIEYTKRLQ 117
                      55554157999**************8.....6999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.25E-464120No hitNo description
SuperFamilySSF474591.09E-866122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.32567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-968118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-472122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MNNNEEFVQL WSEIMTSLAT SKADSELRRT SRSEEDKENM GRKRPAESER ERKRKRVKRQ  60
RVPKSSDKSH NNLLEKKKKR ELIRSKFEEL KQLTPNCPKS DILCILDSVI EYTKRLQLAV  120
FLKDYLSGVL ISPQFAVLKN YV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14155RKRPAESERERKRKR
25158RKRKRVKR
Functional Description ? help Back to Top
Source Description
UniProtRequired during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009875m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008011.12e-72transcription factor MEE8
SwissprotQ9FRI01e-29MEE8_ARATH; Transcription factor MEE8
TrEMBLV4K9771e-97V4K977_EUTSA; Uncharacterized protein
STRINGXP_006415857.12e-98(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1706168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25310.11e-17bHLH family protein