PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10009894m

Common Name

EUTSA_v10009894mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 287aa MW: 32294.4 Da PI: 9.0846

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10009894m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F++ L H +H Thhalv10009894m 172 FECETCEKVFKSYQALGGHRASH 194 89***********9999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.556	4	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.2	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.9E-8	5	26	No hit	No description
Pfam	PF13912	4.7E-5	6	27	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.9E-8	167	194	No hit	No description
Pfam	PF13912	5.5E-11	172	196	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.087	172	194	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	172	199	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	174	194	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.0E-9	231	253	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	231	253	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	233	253	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEEKYCKLCW KRFVNGRALG GHMRSHMLHH PLPSQVDPHP ESASSLMADP GFALQDRESE 60 TESSKKPTRK RSRLTRRRSI YVSLRHQEPE EEGNSETAEE IKTMKVGPRT SQQLLSESCT 120 EQEPKSSVSD AARTAEEDLA FSLVLLSRDK WGKEKEEESD DRIRWEKKRK WFECETCEKV 180 FKSYQALGGH RASHKKKRAL EGSSYSSSSS SVILLVSDEK KKKKKKRSSG HECPICLKVC 240 SSGQALGGHK RSHATGSENN SLVKRGIINL IDLNLPAPSE DEDLVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	226	KKKKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10009894m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493421	1e-69	AB493421.1 Arabidopsis thaliana At1g02030 mRNA for hypothetical protein, partial cds, clone: RAAt1g02030.
GenBank	CP002684	1e-69	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	U89959	1e-69	U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
GenBank	X98669	1e-69	X98669.1 A.thaliana zat1 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006418480.1	0.0	zinc finger protein ZAT1
Swissprot	Q39092	1e-103	ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBL	V4LAN6	0.0	V4LAN6_EUTSA; Uncharacterized protein
STRING	XP_006418480.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	3e-91	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Thhalv10009894m
Entrez Gene	18994730

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003]