PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009917m
Common NameEUTSA_v10009917mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 192aa    MW: 21962.4 Da    PI: 6.5208
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009917mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-2077137257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+++t++ql++Le+ +e+   +p+ ++ +e+Ak+l    ++te++V++WFqNrRa+ k+
  Thhalv10009917m  77 RQRWNPTSTQLKILERIYEErRGTPDPRRVREIAKELsehgQITEKNVYNWFQNRRARSKR 137
                      89*****************9899************************************97 PP
2Wus_type_Homeobox91.96.1e-3076139265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RW+Pt++Q+kiLe++y++   tP  +++++i++eL+e+G+i++kNV++WFQNr+aR+++kq
    Thhalv10009917m  76 TRQRWNPTSTQLKILERIYEERRGTPDPRRVREIAKELSEHGQITEKNVYNWFQNRRARSKRKQ 139
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-1670142IPR009057Homeodomain-like
SuperFamilySSF466898.55E-1871143IPR009057Homeodomain-like
PROSITE profilePS5007115.2473138IPR001356Homeobox domain
SMARTSM003891.2E-1275142IPR001356Homeobox domain
PfamPF000461.5E-1777137IPR001356Homeobox domain
CDDcd000865.63E-1377139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MERESQNGEY DGSVMTEEQM EILRKQIAIY VVISNNLRLL HHSLSSFNPL SSGMNQTGLG  60
NFDQMVASSS GHRMSTRQRW NPTSTQLKIL ERIYEERRGT PDPRRVREIA KELSEHGQIT  120
EKNVYNWFQN RRARSKRKQP QTTTTMAGQA DDAAVATEDE EERRSCEVSG GFESYDHILF  180
PTPDLGNIFI H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009917m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416370.21e-138WUSCHEL-related homeobox 14
SwissprotQ9LM841e-91WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBLV4L4N81e-141V4L4N8_EUTSA; Uncharacterized protein
STRINGXP_006416370.11e-142(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122111732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.17e-79WUSCHEL related homeobox 14
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]