PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010002m
Common NameEUTSA_v10010002mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 184aa    MW: 20760 Da    PI: 5.0769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010002mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-192068355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a++ l+g
  Thhalv10010002m 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDSAALHLRG 68
                     9****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-311977IPR001471AP2/ERF domain
SMARTSM003803.9E-351982IPR001471AP2/ERF domain
PROSITE profilePS5103223.2751976IPR001471AP2/ERF domain
PfamPF008474.0E-131968IPR001471AP2/ERF domain
CDDcd000184.65E-222078No hitNo description
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-222077IPR016177DNA-binding domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENNHVGQQE HRFTVDQVSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
SAALHLRGRG THLNFPELAD SFPRPESSSS EHVQAAAQGA ALMLKPGGST EPDTGSAQGL  120
SRVGLSLDQI QAINEFPLDS PRMGWMQDFE VNDYEELYGR FFGQCDRNEF FEMQQLQSIW  180
DSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162081668ATERF1
3gcc_A1e-162081668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010002m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415065.11e-136ethylene-responsive transcription factor ERF022
SwissprotQ9LQ281e-102ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLV4L1041e-135V4L104_EUTSA; Uncharacterized protein
STRINGXP_006415065.11e-135(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-103ERF family protein