PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010431m
Common NameEUTSA_v10010431mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 396aa    MW: 43372.4 Da    PI: 5.1922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010431mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-185196147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd  l ++v +lG+++W++Iar ++ gR++k+c++rw + 
  Thhalv10010431m 51 KGPWSTEEDAVLTKLVSKLGPRNWSLIARGIP-GRSGKSCRLRWCNQ 96
                     79******************************.***********985 PP
2Myb_DNA-binding53.36.5e-17103147147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia++++ gRt++ +k++w++ 
  Thhalv10010431m 103 RKPFSDEEDRMIISAHAIHGNK-WAVIAKMLP-GRTDNAIKNHWNST 147
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.47746101IPR017930Myb domain
SuperFamilySSF466896.47E-3148144IPR009057Homeodomain-like
SMARTSM007174.6E-155099IPR001005SANT/Myb domain
PfamPF002497.5E-175196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2552104IPR009057Homeodomain-like
CDDcd001675.18E-145395No hitNo description
SMARTSM007173.3E-17102150IPR001005SANT/Myb domain
PROSITE profilePS5129421.818102152IPR017930Myb domain
PfamPF002492.5E-15103147IPR001005SANT/Myb domain
CDDcd001674.81E-13105148No hitNo description
Gene3DG3DSA:1.10.10.601.3E-23105151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEGEETHRSS EPLPLLSADS DEGISAAIEA ELAELAAGDS SGGGGIKSKV KGPWSTEEDA  60
VLTKLVSKLG PRNWSLIARG IPGRSGKSCR LRWCNQLDPC LKRKPFSDEE DRMIISAHAI  120
HGNKWAVIAK MLPGRTDNAI KNHWNSTLRR KYADLWKNSQ WMANQVTTAY VKNENVEGIS  180
NPSFKQQSPQ GDTISPPEPP QANDVTMDDA ANDVTMDDAA NEPQEKAPTE SNAPIESNVS  240
RPVARVGAFS VYNPTSQRNG YRDHNVVPCE GPLIQAAKPD SLAGRFLQSL CDEPHIPSKC  300
GHGCSTYPAG TKFSPNSVLG PEFVDYEEPR AVFNQELISI ATDLNNIAWI KSGLDNTIVR  360
EAEQSLKMDN FNSFDDPRIK FTGMMPRQEF FCARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-39501513104C-Myb DNA-Binding Domain
1msf_C2e-39501513104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010431m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526600.0AK352660.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403424.10.0transcription factor MYB25
SwissprotO041921e-122MYB25_ARATH; Transcription factor MYB25
TrEMBLE4MVW30.0E4MVW3_EUTHA; mRNA, clone: RTFL01-04-P04
TrEMBLV4LQU60.0V4LQU6_EUTSA; Uncharacterized protein
STRINGXP_006403424.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]