PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010437m
Common NameEUTSA_v10010405mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 393aa    MW: 43474.2 Da    PI: 6.0642
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010437mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-12118140426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C f++rtG Ck+G++CkF+H+
  Thhalv10010437m 118 EDCAFYMRTGSCKFGSSCKFNHP 140
                      78********************9 PP
2zf-CCCH30.18.5e-10169188625
                      -SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                      C++++rtG CkyG++C+F+H
  Thhalv10010437m 169 CKYYFRTGGCKYGETCRFNH 188
                      ******************** PP
3zf-CCCH38.91.4e-12212235326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + +C++++r+G Ck+G+ CkF+H+
  Thhalv10010437m 212 EIECPYYMRNGSCKFGADCKFNHP 235
                      568********************9 PP
4zf-CCCH20.11.1e-06321346227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG Ck+  +Ck++H++
  Thhalv10010437m 321 DQPECSYYLKTGDCKFKFKCKYHHPK 346
                      689*********************96 PP
5zf-CCCH33.85.8e-11370391526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C +++r+G+Ck+G+ C+F H+
  Thhalv10010437m 370 ICTHYSRYGICKFGPACRFDHS 391
                      8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6117143IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10118140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089119142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5120139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676163191IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-4163190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5165191IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7169188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5169189IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544209237IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10212235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6213237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4215234IPR000571Zinc finger, CCCH-type
SMARTSM003560.45319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122319347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5323349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5364391IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4365392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239365392IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8370391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4370391IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVNSERISGS VADGFEPEPA SRSSSSADRS PSDLNLLTKL IEAFDNVGFG EVAKDQSGTV  60
MSVSEGNGGV DSKAVDGNQE EEEGGRDADG DGDGESESES ENMVEKREVV YPVRPWAEDC  120
AFYMRTGSCK FGSSCKFNHP LPNPRKIQIA RDKVTEKEED ADNLRLMDCK YYFRTGGCKY  180
GETCRFNHTK PKSCLPSVPE LNFLGLPIRP GEIECPYYMR NGSCKFGADC KFNHPDPTTN  240
GGTDSPSFHG NNGGSIGSFS PKSTLQASSA PWSSQRHANG TTPFIPSMLS QSRGVPSQTP  300
EWNGYQYQYQ MPAEEFPERP DQPECSYYLK TGDCKFKFKC KYHHPKNRLP KQPPYALNDK  360
GLPLRPDQII CTHYSRYGIC KFGPACRFDH SI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010437m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331391e-141BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404259.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV4NHN30.0V4NHN3_EUTSA; Uncharacterized protein
STRINGXP_006404259.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]