PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010493m
Common NameEUTSA_v10010493mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 357aa    MW: 38888.7 Da    PI: 8.965
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010493mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.4e-3973132362
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      e+alkcprCdstntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Thhalv10010493m  73 EAALKCPRCDSTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 132
                      6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3856130IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3275130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.46976130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVFSSLPVNQ FDSHNWQQQQ GNTQQLERVT TDQNPNFNLP QFSSPPASQA GSSQARVNSM  60
VERARIAKVP LPEAALKCPR CDSTNTKFCY FNNYNLTQPR HFCKTCRRYW TRGGALRNVP  120
VGGGFRRNKR SKSNGCGRSK STVVVSADNT NTTSSLSSHP SYSNPSKFPS YGQIPGYSSN  180
LPILPPFQGV GDYNSSNIGL DFGGIQISNV MSGMSSSGGI LDPWRMSSLQ QAQQFPFLIN  240
TTGLEQSSNV LYPLLQGNES VNQANPQQES SSDYSNQLRS KPLMDMASSG DGAAQPRNVK  300
SEDNDQDPDT LSRNFLGNIK INSAGNDEYT PWGGNSSINS SWTGFTSNNS TGHLSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010493m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403466.10.0dof zinc finger protein DOF3.6 isoform X1
SwissprotQ9M2U11e-168DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLV4LMC70.0V4LMC7_EUTSA; Uncharacterized protein
STRINGXP_006403466.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-157OBF-binding protein 3