PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010503m
Common NameEUTSA_v10010503mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 351aa    MW: 39323.9 Da    PI: 7.495
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010503mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.88.2e-4061362128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      ++GfrF Pt+ el+++yL+ ++ g ++++++ i+ +d+++veP +Lp+    +++ + ++w fF++r++++a+g r++r+t sgyWkatg+  +
  Thhalv10010503m   6 AVGFRFYPTEVELISFYLRTQLGGGNVTIHSLIPIFDVFSVEPTQLPNlageRCRRDAEQWLFFVPRQEREARGGRPSRTTGSGYWKATGSPGP 99 
                      78***************************999***************656666666888*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s +++++g+kkt+vfy g+ap+g+kt+W m+ey++
  Thhalv10010503m 100 VFSPDNRVIGVKKTMVFYIGKAPTGRKTKWKMNEYKA 136
                      ***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-443163IPR003441NAC domain
PROSITE profilePS5100545.4335163IPR003441NAC domain
PfamPF023651.6E-197135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEEELAVGFR FYPTEVELIS FYLRTQLGGG NVTIHSLIPI FDVFSVEPTQ LPNLAGERCR  60
RDAEQWLFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSPDNRVIGV KKTMVFYIGK  120
APTGRKTKWK MNEYKAVDET SSSYVSTIPK LRHEFSVCRI YVKSGSSRAF DRRPTETFGI  180
ERTLPRYGTE TLSRARISTS PETSYLGRDQ VDMSMNATTQ RNLKVVDELS QLREKKLHSN  240
GVETSSYATI STSPETSYLG RYQVDLSVNG ITTQRNLEMI DELSQHREEK LPSNGAGASS  300
FATISTSPET SYSGGDQVDF SVNATTTQCN SVMVDGLSQP FWEWEQLNWS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-32516817170NO APICAL MERISTEM PROTEIN
1ut4_B3e-32516817170NO APICAL MERISTEM PROTEIN
1ut7_A3e-32516817170NO APICAL MERISTEM PROTEIN
1ut7_B3e-32516817170NO APICAL MERISTEM PROTEIN
3swm_A4e-32516820173NAC domain-containing protein 19
3swm_B4e-32516820173NAC domain-containing protein 19
3swm_C4e-32516820173NAC domain-containing protein 19
3swm_D4e-32516820173NAC domain-containing protein 19
3swp_A4e-32516820173NAC domain-containing protein 19
3swp_B4e-32516820173NAC domain-containing protein 19
3swp_C4e-32516820173NAC domain-containing protein 19
3swp_D4e-32516820173NAC domain-containing protein 19
4dul_A3e-32516817170NAC domain-containing protein 19
4dul_B3e-32516817170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010503m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386411e-100AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBankCP0026861e-100CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404466.10.0putative NAC domain-containing protein 61
SwissprotQ9M2901e-122NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLV4LQ380.0V4LQ38_EUTSA; Uncharacterized protein
STRINGXP_006404466.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-126NAC domain containing protein 61