PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010518m
Common NameEUTSA_v10010518mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 340aa    MW: 38279.5 Da    PI: 7.5216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010518mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06326226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k+ lC+ffa  G C  G++C F+H+
  Thhalv10010518m  3 KRILCKFFAH-GACLKGENCEFSHD 26
                     889***6666.*************5 PP
2zf-CCCH26.79.5e-093454526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C ++++ G+C+yG+rC++ H+
  Thhalv10010518m 34 ICTYYQK-GICSYGSRCRYEHV 54
                     7******.***********997 PP
3zf-CCCH19.91.3e-06121143326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C+ +a+ G C++Gd C+ +Hg
  Thhalv10010518m 121 QPICS-YAAAGDCPRGDECPHIHG 143
                      68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6242956IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53153IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549118145IPR000571Zinc finger, CCCH-type
SMARTSM003560.019119144IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.83E-13177251No hitNo description
Gene3DG3DSA:3.30.40.107.2E-10180246IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.64E-4186246No hitNo description
SMARTSM001845.5E-7187244IPR001841Zinc finger, RING-type
PfamPF000974.3E-7187244IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.342187245IPR001841Zinc finger, RING-type
PROSITE patternPS005180211220IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.37274302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319274303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSKRILCKFF AHGACLKGEN CEFSHDWKDP TNNICTYYQK GICSYGSRCR YEHVKASRPH  60
PSASSSSGVP RSPPASASNL LALSSVSSSC LKPAWNLDSL HQDSLDEVST FNPGTTKPEE  120
QPICSYAAAG DCPRGDECPH IHGNICPTCR KHCLHPFRLE ERDEHKRVCE KKHKQLEALK  180
LSQEIECCVC LERVLSKPTP SERKFGLLTE CDHAFCIACI RNWRSSSPST GMDVNSTLRA  240
CPICRKLSYF VVPSVIWFSA PEEKKEIINN YREKLRSIDC KHFNFGDGNC PFGTSCFYKH  300
AYHDGRLEEV VLRHLDAEDG QTVIAKDIRL SDFLEDMHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010518m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035760.0GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403739.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLV4LRS70.0V4LRS7_EUTSA; Uncharacterized protein
STRINGXP_006403739.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-156C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]