PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10010575m

Common Name

EUTSA_v10010575mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Trihelix

Protein Properties

Length: 306aa MW: 34225.7 Da PI: 9.6922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10010575m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.7e-16	40	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v+k++ ++++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Thhalv10010575m 40 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVAKHVssraSHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 123 5***********************************87766777788999*************99997......46**9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-20	38	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEDGDSNQEN PQSLQTNHDD SSHKKPPASS SVVDRLKRDE WSEGAVSSLL EAYETKWVLR 60 NRAKLKGQDW EDVAKHVSSR ASHTKSPKTQ TQCKNKIESM KKRYRSESAT ADGSSWPLYP 120 RLDHLLRGTS SVQPQAVLPL NCSAPLLLLE PPVTHPPQPP PAAQISHGSN GVGKIPKEDG 180 VKPEFTEEKP EKAAEMDTDS STPVICREKS KVRGKKLKRR YKEEKEEIAG SIRWLAEVVM 240 RSERARMETM KEIERMRAEA EVKRGEMDLK RTEIMANTQL EIARLFAVAA SGHKGVDSSL 300 RIGRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10010575m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403581.1	0.0	trihelix transcription factor ASIL1
TrEMBL	V4LMS5	0.0	V4LMS5_EUTSA; Uncharacterized protein
STRING	XP_006403581.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-151	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thhalv10010575m
Entrez Gene	18021170