PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010657m
Common NameEUTSA_v10010657mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 255aa    MW: 29231 Da    PI: 8.8546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010657mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-162067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l   v ++G g+W+tI+   g+ R +k+c++rw +yl
  Thhalv10010657m 20 KGLWSPEEDEKLRSHVLKYGHGCWSTIPIQAGLQRNGKSCRLRWVNYL 67
                     678*******************************************97 PP
2Myb_DNA-binding51.62.2e-1673118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g +T+eE+  l+ ++  lG++ W+ I+++++ gRt++++k++w++yl
  Thhalv10010657m  73 KGLFTKEEETTLLSLHSILGNK-WSQISKYLP-GRTDNEIKNYWHSYL 118
                      5779******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5011567IPR017930Myb domain
SuperFamilySSF466893.67E-3019114IPR009057Homeodomain-like
SMARTSM007171.6E-111969IPR001005SANT/Myb domain
PfamPF002497.1E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-222174IPR009057Homeodomain-like
CDDcd001678.41E-102367No hitNo description
PROSITE profilePS5129425.91368122IPR017930Myb domain
SMARTSM007176.9E-1672120IPR001005SANT/Myb domain
PfamPF002493.0E-1573118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2575121IPR009057Homeodomain-like
CDDcd001672.89E-1176118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVFKSEKSNP KLKFKGKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPIQA GLQRNGKSCR  60
LRWVNYLRPG LKKGLFTKEE ETTLLSLHSI LGNKWSQISK YLPGRTDNEI KNYWHSYLKK  120
SVTPTQHETT RPQTHSITNS LKAMESTTGR SSSLINVGES LNARVPSFSP SLVFSEWLDH  180
SLVLDQSPQK CSYVQDLIVP EEKGLRFYEN NNALDDFIPN SDFLLENEIF ETEFCSSFSN  240
NFLFDGLTNE QRSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-252012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010657m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404203.10.0transcription factor LAF1
SwissprotQ9M0K46e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLV4NHJ30.0V4NHJ3_EUTSA; Uncharacterized protein
STRINGXP_006404203.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-136myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]