PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10010666m

Common Name

EUTSA_v10010666mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

LBD

Protein Properties

Length: 243aa MW: 26270.6 Da PI: 7.2883

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10010666m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.5	1.5e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q Thhalv10010666m 2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISSVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQ 95 6******************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Thhalv10010666m 96 AAVETVLR 103 999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.59	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISSVPESQC 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRGGGG 120 FGGFPSPTSD EASEICTEML NDSGDRNIYH HSRFSSSRSR STASPPKRKR LASEQQQQQL 180 NHSSELDLSL IPTFPIKEEM GRPETPSMYS AESVTTASFD NSAGERFVRG GGETTKLLNL 240 FA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10010666m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085761	1e-133	AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006404087.1	1e-180	LOB domain-containing protein 38
Swissprot	Q9SN23	1e-136	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	V4L5E6	1e-178	V4L5E6_EUTSA; Uncharacterized protein
STRING	XP_006404087.1	1e-179	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-120	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Thhalv10010666m
Entrez Gene	18021285