PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10010750m

Common Name

EUTSA_v10010750mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

SRS

Protein Properties

Length: 186aa MW: 20628.3 Da PI: 10.0456

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10010750m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	144.9	6.8e-45	40	175	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 ++ C+dCGn+akk+C +eRCRtCCk+rg++CathvkstWvp++ ++ ++++k+ r + s+k ++++ + + +++s+ Thhalv10010750m 40 DEKVCRDCGNRAKKECLFERCRTCCKTRGYQCATHVKSTWVPSSSSSS-----------------SDRKKKLRIDYSDKYNSANVSIVRTTTSR 116 5789************************************986554.................33444444444555555555555566666 PP DUF702 98 keletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +e+++++ lP +++++avfr++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ Thhalv10010750m 117 QETSFKEgLPGKIEAPAVFRRTRVTAISNnEQAEIGYQATVTINGHVFKGFLHYYGVDH 175 66666555***************9868899*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-40	42	174	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-25	43	83	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.7E-28	125	173	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MLGLRNILLA APPSQITQTS PSPANFAAVE DNKARNNNVD EKVCRDCGNR AKKECLFERC 60 RTCCKTRGYQ CATHVKSTWV PSSSSSSSDR KKKLRIDYSD KYNSANVSIV RTTTSRQETS 120 FKEGLPGKIE APAVFRRTRV TAISNNEQAE IGYQATVTIN GHVFKGFLHY YGVDHNKAFP 180 CLSKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10010750m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403577.1	1e-137	protein SHI RELATED SEQUENCE 6
Swissprot	Q9M2U4	5e-99	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	V4L3Z7	1e-136	V4L3Z7_EUTSA; Uncharacterized protein
STRING	XP_006403577.1	1e-137	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-93	SHI-related sequence 6

Link Out ? help Back to Top
Phytozome	Thhalv10010750m
Entrez Gene	18021225

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]