PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010755m
Common NameEUTSA_v10010755mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YB
Protein Properties Length: 183aa    MW: 19821.1 Da    PI: 6.5347
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010755mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.44.3e-5833130198
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimk+ lPan+ki+kdaket+qecvsefisf+tseasdkcqrekrktingddllwa++tlGfedy+eplkvyl++yre+e
  Thhalv10010755m  33 VREQDRFLPIANISRIMKRGLPANGKIAKDAKETMQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMTTLGFEDYIEPLKVYLMRYREME 126
                      69******************************************************************************************** PP

            NF-YB  95 gekk 98 
                      g++k
  Thhalv10010755m 127 GDTK 130
                      *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.7E-5529147IPR009072Histone-fold
SuperFamilySSF471139.16E-4136138IPR009072Histone-fold
PfamPF008085.7E-2839103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.3E-216785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.3E-2186104No hitNo description
PRINTSPR006157.3E-21105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MADSQAKSSG MSPGGGGGSH ESGGDQSPRS SNVREQDRFL PIANISRIMK RGLPANGKIA  60
KDAKETMQEC VSEFISFITS EASDKCQREK RKTINGDDLL WAMTTLGFED YIEPLKVYLM  120
RYREMEGDTK GSGKGAEPSA KRDGQPSQVA QFPQIGQQGS YSQGPYGNSQ ASHMMVQMPN  180
TE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4933124192Transcription factor HapC (Eurofung)
4g92_B9e-4933124192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010755m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1768271e-172AK176827.1 Arabidopsis thaliana mRNA for transcription factor NF-Y, CCAAT-binding - like protein, complete cds, clone: RAFL25-38-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403703.11e-134nuclear transcription factor Y subunit B-10
SwissprotQ67XJ21e-104NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLV4NG961e-132V4NG96_EUTSA; Uncharacterized protein
STRINGXP_006403703.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-94nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]