PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010915m
Common NameEUTSA_v10010915mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 276aa    MW: 32524.4 Da    PI: 6.534
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010915mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v++lG ++W++ a+  g++R++k+c++rw +yl
  Thhalv10010915m 11 RGPWLEEEDERLVKFVTLLGERRWDSLASVSGLKRSGKSCRLRWMNYL 58
                     89********************************************97 PP
2Myb_DNA-binding51.42.5e-1664108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE  ++ ++++++G++ W++Iar+++ gRt++++k++w+++
  Thhalv10010915m  64 RGPMSQEEKMIIFELHALWGNK-WSKIARRLP-GRTDNEIKNYWRTH 108
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.611658IPR017930Myb domain
SuperFamilySSF466893.74E-279105IPR009057Homeodomain-like
SMARTSM007171.4E-131060IPR001005SANT/Myb domain
PfamPF002491.8E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-201265IPR009057Homeodomain-like
CDDcd001672.67E-81358No hitNo description
PROSITE profilePS5129425.22459113IPR017930Myb domain
SMARTSM007173.5E-1663111IPR001005SANT/Myb domain
PfamPF002491.6E-1464108IPR001005SANT/Myb domain
CDDcd001671.97E-966109No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2466113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDCKKEETLR RGPWLEEEDE RLVKFVTLLG ERRWDSLASV SGLKRSGKSC RLRWMNYLNP  60
SLKRGPMSQE EKMIIFELHA LWGNKWSKIA RRLPGRTDNE IKNYWRTHFK KKVESQNYGR  120
YTNFNRSFIL AYANFIAALN KKMMCFAVDK IIDWRGNTGE ELWRKYKETE ITWTRTTTQE  180
HGFDETVKES KQRQMESDKE TDGGICEGES FGVMNSPYEN RISDWISEIS TDQSDANLLE  240
DHSSSSSESN TNINVGSWWF QETKDFEEFS CYLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2891155110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010915m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-136AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
GenBankAC1895021e-136AC189502.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087M20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013780.11e-160transcription factor MYB27
SwissprotQ9SCP11e-134MYB27_ARATH; Transcription factor MYB27
TrEMBLV4LN450.0V4LN45_EUTSA; Uncharacterized protein
STRINGXP_006403716.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-125myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]