PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10010956m
Common NameEUTSA_v10010956mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 177aa    MW: 19995.9 Da    PI: 9.8226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10010956mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001392114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ Cg++F +   L  H+r+H
  Thhalv10010956m  92 HKCSFCGQMFGTGQALGGHMRKH 114
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.5E-443101IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF576674.43E-647114No hitNo description
PfamPF139128.9E-114772IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9724875IPR007087Zinc finger, C2H2
SMARTSM003550.434870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78592119IPR007087Zinc finger, C2H2
SMARTSM003550.009892114IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-892116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKRDRSDYEE SIKHIDIVKS LMMLSQSFVV KQIDVTQSTG SKTNDNRFEC KTCNRKFDSF  60
QALGGHRASH KKPKLSVDHE QMKHPNIEND KHKCSFCGQM FGTGQALGGH MRKHRASMMT  120
EQSGISSAVY TRPVLNRCSS SKRIFSLDLN LTPLENDIVC IFGKNLVPQN DLKFVN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10010956m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403670.11e-130zinc finger protein ZAT11
SwissprotQ9SLD44e-76ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV4LZ031e-129V4LZ03_EUTSA; Uncharacterized protein
STRINGXP_006403670.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-105C2H2 family protein