PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011114m
Common NameEUTSA_v10011114mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 192aa    MW: 21695.6 Da    PI: 8.2432
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011114mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.4e-4071061100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC + Cv+apyfpa+q+ k+ +vhk+FGas+v ++l+++++++r+dam+sl++eA+ar+ dPv+G++ +i +lq+qle l++++
  Thhalv10011114m   7 PCAACKHLRRKCIQACVFAPYFPANQQDKYTAVHKVFGASHVARILNEIHPNQRQDAMNSLAFEAQARLLDPVHGCTPLIYNLQRQLEDLEHQI 100
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      +++k+e
  Thhalv10011114m 101 QVAKNE 106
                      *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.1246107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-397104IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:3.40.50.20201.5E-41056IPR029057Phosphoribosyltransferase-like
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKMPTPCAA CKHLRRKCIQ ACVFAPYFPA NQQDKYTAVH KVFGASHVAR ILNEIHPNQR  60
QDAMNSLAFE AQARLLDPVH GCTPLIYNLQ RQLEDLEHQI QVAKNELASY NIVTTLEPPP  120
PITYQQNHHN PLMMPVGNYG GHLTSQQLRQ LPEDAHRYAS AHTAQIQQKP ETQTNHKSES  180
DNKKDMISSK I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-38611010114LOB family transfactor Ramosa2.1
5ly0_B3e-38611010114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011114m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404026.11e-142LOB domain-containing protein 28
SwissprotQ9SCS41e-66LBD28_ARATH; LOB domain-containing protein 28
TrEMBLV4LNZ61e-141V4LNZ6_EUTSA; Uncharacterized protein
STRINGXP_006404026.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.16e-69LOB domain-containing protein 28