PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011122m
Common NameEUTSA_v10011122mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 548aa    MW: 61168 Da    PI: 5.2533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011122mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.81.6e-1091835475374
             GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                      + +cA+ ++  +   a ++L r++e +s +gdp++R+ +yfteAL++rl++         + +et++ + ++ + ++k++++++P+ kf+hlta
  Thhalv10011122m 183 IHDCARNLEI-KPDVAAETLVRIRESVSDSGDPTERVGFYFTEALSKRLSS--------TAKKETESPSLKDFILSYKTLNDACPFSKFAHLTA 267
                      5677777766.56789999*******************************9........34455555569************************ PP

             GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      NqaIlea+++++ +Hi+Df+i qG+QW+aLlqaLa+R++g+p ++Ri g+ +p+ g     +l +tg+rL++fA+ l+++fef + + + ++ l
  Thhalv10011122m 268 NQAILEATHNSSNIHIVDFGIFQGVQWAALLQALATRASGKPaRIRISGIPAPSLGdsPGMSLIATGNRLRDFAAVLDLNFEFYP-ILTPIHLL 360
                      **************************************77666***********9987888999*********************.799***** PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      +++++rv+p++ laVn++l+l++llde++++ +   + L+l +sl+P++v++ e e+++n+ +F++r+ +al++ysa+f+sle +l r+s+er 
  Thhalv10011122m 361 NVSSFRVEPDDFLAVNFMLELYKLLDETATIVD---NALRLARSLNPRIVTLGEYEVSLNRVEFVNRVKNALRFYSAVFESLEPNLERDSKERL 451
                      ***************************999999...********************************************************** PP

             GRAS 284 kvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSa 372
                       vEr+l+gr+i ++v   +++   r  r+e++e+Wr  +e+aGF+pv+ s++a++qa+lll  ++ s  y++ e++  ++ l W + pL++vS+
  Thhalv10011122m 452 RVERVLFGRRIADLVRPGNNKpgnRSGRMEEKEQWRVLMEKAGFEPVKPSNYAVSQASLLLWSYNySTLYSLVESEPGFIsLAWDNVPLLTVSS 545
                      ***************866554444*****************************************9999*****9999999************* PP

             GRAS 373 Wr 374
                      Wr
  Thhalv10011122m 546 WR 547
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.782153525IPR005202Transcription factor GRAS
PfamPF035145.4E-107183547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQLIK QKQQQQHQSQ LQHQQEQPIP WPNQSSGYTL TGSGFLDPIQ  60
VAGDPGFQFL HMEHQNAVVS EGFRFSSDEE FDSDEWMESL INGGDASQTN QDFSIHGHDP  120
SVVFPSRLST PSDLNGVIFL NKDDSASQLT NPPVATTLWT PSPPQLVTKE PAFDLNRPVL  180
KAIHDCARNL EIKPDVAAET LVRIRESVSD SGDPTERVGF YFTEALSKRL SSTAKKETES  240
PSLKDFILSY KTLNDACPFS KFAHLTANQA ILEATHNSSN IHIVDFGIFQ GVQWAALLQA  300
LATRASGKPA RIRISGIPAP SLGDSPGMSL IATGNRLRDF AAVLDLNFEF YPILTPIHLL  360
NVSSFRVEPD DFLAVNFMLE LYKLLDETAT IVDNALRLAR SLNPRIVTLG EYEVSLNRVE  420
FVNRVKNALR FYSAVFESLE PNLERDSKER LRVERVLFGR RIADLVRPGN NKPGNRSGRM  480
EEKEQWRVLM EKAGFEPVKP SNYAVSQASL LLWSYNYSTL YSLVESEPGF ISLAWDNVPL  540
LTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1441785473375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (Probable). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q53K16, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011122m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404015.10.0scarecrow-like protein 7
SwissprotQ9SCR00.0SCL7_ARATH; Scarecrow-like protein 7
TrEMBLV4LZW20.0V4LZW2_EUTSA; Uncharacterized protein
STRINGXP_006404015.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]