PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011379m
Common NameEUTSA_v10011379mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 534aa    MW: 59387.8 Da    PI: 5.852
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011379mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.41.9e-1361645332374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +  L+ecA+av++ d +++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++ykal++++ +     e l+++++++e++P++kf++
  Thhalv10011379m 164 RGMLYECAKAVENYDVAMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLIARLASSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGY 254
                      5689****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                        aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +gvpfefn  +a  ++
  Thhalv10011379m 255 ESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPRVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFNG-AALCCT 347
                      *******************************************************999999**************************.899*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++e+e+L v++gEalaVn+ l lh+++desv++e++rd++L+lvk+lsP vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++e
  Thhalv10011379m 348 EVEMEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPSVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKE 441
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ri+vE+++l+re+vn++aceg er+erhe l+kWr+r+++aGFkp+pls+++++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr
  Thhalv10011379m 442 RINVEQHCLAREVVNLIACEGLEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 533
                      ****************************************************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.513137514IPR005202Transcription factor GRAS
PfamPF035146.5E-134164533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEATQKHIIQ DGSSMFYHKP SSAQQMDISV QTFDSYCTLE SSSGTKSHPC LNNNSSSTTS  60
FSSNGSPISQ SNNNNNNNSS RFSEFNHSPD DNNNNSPLSG SSATNNNETE LSLMLKDLET  120
AMMEPDLDNS FNGCDHQAGF GQQHRVVSSA MYRSMEMISR GDLRGMLYEC AKAVENYDVA  180
MTDWLISQLQ QMVSVSGEPV QRLGAYMLEG LIARLASSGS SIYKALRCKD PTGPELLTYM  240
HILYEACPYF KFGYESANGA IAEAVKNESF VHIIDFQISQ GGQWVSLIRA LGARPGGPPR  300
VRITGIDDPR SSFARQGGLE LVGQRLGKLA EMCGVPFEFN GAALCCTEVE MEKLGVRNGE  360
ALAVNFPLVL HHMPDESVTV ENHRDRLLRL VKRLSPSVVT LVEQEANTNT APFLPRFVET  420
MNHYLAVFES IDVKLARDHK ERINVEQHCL AREVVNLIAC EGLEREERHE PLGKWRSRFH  480
MAGFKPYPLS SYVNATIKGL LESYSEKYTL EERDGALYLG WKNQPLITSC AWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-611675338375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011379m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527240.0AK352724.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006003.10.0scarecrow-like protein 5
RefseqXP_024006004.10.0scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLE4MW270.0E4MW27_EUTHA; mRNA, clone: RTFL01-03-J19
TrEMBLV4KKG40.0V4KKG4_EUTSA; Uncharacterized protein
STRINGXP_006393131.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]