PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011447m
Common NameEUTSA_v10011447mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 480aa    MW: 53968.6 Da    PI: 6.4554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011447mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS516.11.2e-157544761374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++t++++ see+++++lf++++Pilk+s
  Thhalv10011447m  54 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTKTNHLSEEIHVRRLFFDMFPILKVS 147
                      689******************************************************************************************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +l++N+aI ea+ege++vH+iD+++s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l +++ rL + Ae+l++pf+fn+ v ++l++
  Thhalv10011447m 148 YLLTNRAIIEAMEGEKMVHVIDLNASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMALRLVEEAEKLDIPFQFNP-VLSTLDC 236
                      *******************************************************....9**************************.79***** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll....................................................desvsles..erdevL 228
                      l++e+Lrvk+gEala+++vlqlh++l                                                    ++s++l++  ++d++L
  Thhalv10011447m 237 LNVEQLRVKTGEALAISSVLQLHNFLasdddfvrkncalrfqnnpngidlqrvltmshgeapendmsnnngyspsgdsASSLPLHNsgRIDRFL 330
                      ****************************************************************************99777777766799**** PP

             GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                      +++++lsPk++vv+eq++dhn+++++er+le+l++y+alfd+le+k+pr+s++rikvE++l+g+ei+n++aceg+errerhe+lekW +r+e a
  Thhalv10011447m 331 NAIWGLSPKIMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIIACEGSERRERHEKLEKWCQRIELA 424
                      ********************************************************************************************** PP

             GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      GF++vpls++a+ qa++ll+ +++dgyr++eesg++v++W+drpL+svSaWr
  Thhalv10011447m 425 GFGNVPLSYYAMLQARRLLQGYGFDGYRIKEESGCAVICWQDRPLYSVSAWR 476
                      ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.89528456IPR005202Transcription factor GRAS
PfamPF035144.3E-15554476IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MVAMFQEDNG TSSVASSPLQ VFSTMSLTRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT  60
CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE ALANRILKSW PGLYKALNAT  120
QTKTNHLSEE IHVRRLFFDM FPILKVSYLL TNRAIIEAME GEKMVHVIDL NASEPAQWLA  180
LIQAFNSRPE GPPHLRITGV HHQKEVLDQM ALRLVEEAEK LDIPFQFNPV LSTLDCLNVE  240
QLRVKTGEAL AISSVLQLHN FLASDDDFVR KNCALRFQNN PNGIDLQRVL TMSHGEAPEN  300
DMSNNNGYSP SGDSASSLPL HNSGRIDRFL NAIWGLSPKI MVVTEQDSDH NGSTLMERLL  360
ESLYTYAALF DCLETKVPRT SQDRIKVEKM LFGEEIKNII ACEGSERRER HEKLEKWCQR  420
IELAGFGNVP LSYYAMLQAR RLLQGYGFDG YRIKEESGCA VICWQDRPLY SVSAWRCRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-41544764375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011447m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAY0561540.0AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankAY0912600.0AY091260.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393154.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV4JY520.0V4JY52_EUTSA; Uncharacterized protein
STRINGXP_006393154.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]