PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10011463m

Common Name

EUTSA_v10011463mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 460aa MW: 51016.2 Da PI: 8.5981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10011463m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	4.8e-12	396	441	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq Thhalv10011463m 396 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 441 689*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	390	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-16	393	456	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.77E-11	394	445	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-15	395	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-9	396	441	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-14	396	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0042335	Biological Process	cuticle development
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MFVFVPSKKN DIKLPSRSLS PLFFSFFFPF LVFFISHILI YNLRDLSPGK SPGESAKLPV 60 LSNPTEKITR EEKNTKATKM ESEFQQHHFH LHDHQHQRPR NSGLIRYQSA PSSYFSSFGD 120 RESIEEFLDR PTSPETERIL SGFLQTTDTS NNVDSFLHHT FNSDGSEKKP PEVKMEEVDI 180 PATAMEVVVS GGGDDVEVSV APDSIGYDSV VRNLGQNKRP RERDDRTPAN NLARHNSSPA 240 GLFSSVDVET AYAAVMKSMG GFGGGNLMNT SNTEASSFTP RSKLPPSASR QMSPISEIDV 300 KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LSAIARTQSG GLDQYKTKDE DSASRRPPLA 360 HHMSLPKSLS DIEQLLSDSI PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM 420 DTQTNTADML DLAVQYIKDL QEQVKELEES RARCRCSSA*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MFVFVPSKKN DIKLPSRSLS PLFFSFFFPF LVFFISHILI YNLRDLSPGK SPGESAKLPV  60
LSNPTEKITR EEKNTKATKM ESEFQQHHFH LHDHQHQRPR NSGLIRYQSA PSSYFSSFGD  120
RESIEEFLDR PTSPETERIL SGFLQTTDTS NNVDSFLHHT FNSDGSEKKP PEVKMEEVDI  180
PATAMEVVVS GGGDDVEVSV APDSIGYDSV VRNLGQNKRP RERDDRTPAN NLARHNSSPA  240
GLFSSVDVET AYAAVMKSMG GFGGGNLMNT SNTEASSFTP RSKLPPSASR QMSPISEIDV  300
KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LSAIARTQSG GLDQYKTKDE DSASRRPPLA  360
HHMSLPKSLS DIEQLLSDSI PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM  420
DTQTNTADML DLAVQYIKDL QEQVKELEES RARCRCSSA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00195	DAP	Transfer from AT1G51140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10011463m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY034941	0.0	AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBank	AY063120	0.0	AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024006340.1	0.0	transcription factor bHLH122
Swissprot	Q9C690	0.0	BH122_ARATH; Transcription factor bHLH122
TrEMBL	V4KKA9	0.0	V4KKA9_EUTSA; Uncharacterized protein
STRING	XP_006393076.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10011463m
Entrez Gene	18010834

Publications ? help Back to Top
Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]