PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011480m
Common NameEUTSA_v10011480mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 445aa    MW: 49821.1 Da    PI: 6.7523
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011480mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.13.4e-131414441374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal............ 81 
                      l++lL+++A++vs++++++aq+lL+ ls ++sp+gd+++Rl++ f +AL+ r++r +++ +++ +++++t+e++ss+++++             
  Thhalv10011480m  41 LRRLLFTAADFVSQSNFSAAQNLLSILSANSSPYGDSTERLVHLFSKALSIRINRqQQDPTAENVATWTTNEMTSSTVFTSSvckeqflfrtkn 134
                      689****************************************************8888999999******99966666666699999****** PP

             GRAS  82 ...........klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeel 158
                                   +++++P+++f+hltaNqaIl+a+e++   ++Hi+D+disqGlQWp+L+qaLa+R+    ++ppslRiTg+g+    + + l
  Thhalv10011480m 135 nnnsefescyyLWLNQLTPFIRFGHLTANQAILDATETNgdGALHILDLDISQGLQWPPLMQALAERSsnpnSPPPSLRITGCGR----DVTGL 224
                      **99999865444************************998899************************988877799*********....***** PP

             GRAS 159 eetgerLakfAeelgvpfefnvl..vakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                      ++tg+rL++fA++lg++f+f++l  v+++l+ l  +++ L+++   gE++aVn+v+ lhr+ ++++++     ++L+++ksl+P++v+++e+ea
  Thhalv10011480m 225 NRTGDRLTRFANSLGLQFQFHTLviVEEDLAGLllQIRLLALSAvqGETIAVNCVHFLHRFSNDDGDMIG---HFLSAIKSLNPRIVTMAEREA 315
                      **********************965444554333366666666566*********************999...********************* PP

             GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                      +h+++sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva++ +er++rh+++e W+e ++++GF +vp++++a +qakll
  Thhalv10011480m 316 NHGDHSFLNRFAEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAKAEERKQRHRRFEIWEEIMKRFGFVNVPIGSFAFSQAKLL 409
                      ********************************************************************************************** PP

             GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      lr ++ s+gy+++  ++sl+lgW++rpL++vS+W+
  Thhalv10011480m 410 LRLHYpSEGYNLQFLNNSLFLGWQNRPLFFVSSWK 444
                      **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.57115423IPR005202Transcription factor GRAS
PfamPF035141.2E-12841444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLASFKSSSS SSEDATTTTE NPPPPLCLAS SSASSSASHH LRRLLFTAAD FVSQSNFSAA  60
QNLLSILSAN SSPYGDSTER LVHLFSKALS IRINRQQQDP TAENVATWTT NEMTSSTVFT  120
SSVCKEQFLF RTKNNNNSEF ESCYYLWLNQ LTPFIRFGHL TANQAILDAT ETNGDGALHI  180
LDLDISQGLQ WPPLMQALAE RSSNPNSPPP SLRITGCGRD VTGLNRTGDR LTRFANSLGL  240
QFQFHTLVIV EEDLAGLLLQ IRLLALSAVQ GETIAVNCVH FLHRFSNDDG DMIGHFLSAI  300
KSLNPRIVTM AEREANHGDH SFLNRFAEAV DHYVAIFDSL EATLPPNSRE RLTLEQRWFG  360
KEILDVVAAK AEERKQRHRR FEIWEEIMKR FGFVNVPIGS FAFSQAKLLL RLHYPSEGYN  420
LQFLNNSLFL GWQNRPLFFV SSWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-604944326377Protein SCARECROW
5b3h_D8e-604944326377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011480m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023280.0AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBankAC0052230.0AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBankAY1964820.0AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBankBT0265190.0BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392620.10.0scarecrow-like protein 18
SwissprotQ9ZWC50.0SCL18_ARATH; Scarecrow-like protein 18
TrEMBLV4MF510.0V4MF51_EUTSA; Uncharacterized protein
STRINGXP_006392620.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]