PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011499m
Common NameEUTSA_v10011499mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 430aa    MW: 47259.7 Da    PI: 10.1099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011499mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.7e-06189212123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      + Cp Cg++F+  ++L++H+ + H
  Thhalv10011499m 189 FACPQCGEVFPKLETLENHQAVrH 212
                      78******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.118189217IPR007087Zinc finger, C2H2
SMARTSM003550.007189212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191212IPR007087Zinc finger, C2H2
SuperFamilySSF563992.21E-22214425No hitNo description
Gene3DG3DSA:3.90.228.101.3E-13217426IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAPPLPFLPD QTKQTRLSSD QKKKNRNKKT PPPPQTLMQT QRQKVKQKQK TVLSSSSSSS  60
SSSFSSWSQI KNLLSCKQIE GPRVHDPSKV TSSSCGSSLC KFSDVIYGNA RVIHRSDHSP  120
ESSNLGQDAG LLTRKPVTRG SFSSVRSNGC GAYTSYSSSK AMHFRKLSGC YECHMIVDPS  180
RYPISPRIFA CPQCGEVFPK LETLENHQAV RHAVSELGPE DSGRNIVDII FKSSWLRKDS  240
PIYKIERILK VHNTQRTIQR FEDCRDAVKS HAHASTRKEP RSAADGNELL RFHCTTVSCS  300
LGSRGSTSLC SNVPGCRVCT IIRHGFHAKT LRLGGGTNEI KGVRTTASSG RAHDALRCFD  360
QRRAMLVCRV IAGRVRRVQS DAPEDEIGSG SYDSVAGVAG VYTNLDDLVV FNPKAILPCF  420
VVIYKVSEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011499m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393516.10.0uncharacterized protein LOC18010701
TrEMBLV4KLJ30.0V4KLJ3_EUTSA; Uncharacterized protein
STRINGXP_006393516.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-152C2H2-like zinc finger protein