PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011582m
Common NameEUTSA_v10011582mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 372aa    MW: 40741.4 Da    PI: 7.507
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011582mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.61.2e-1686172186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+++ +++Li+a  ++ ++ ++g lk+++W+ev++ +   r+ ++ ++ +qCk++++ ++k+yk++k+   ++  +  s++++f++le
  Thhalv10011582m  86 CWSEEATKVLIDAWGDRFSEPGKGTLKQQQWKEVAEIVnesRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSRWVFFKKLE 172
                      7*************************************98888999**************************98..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-2485174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEEDDETQSL QSPGDSLSPA PSSPPILPTS DVTVASVTKP PVSSQSPSGN ALALVVHTPS  60
VTGVSGNRNG RSGGGSAGGG GGRDDCWSEE ATKVLIDAWG DRFSEPGKGT LKQQQWKEVA  120
EIVNESRQCK YPKTDIQCKN RIDTVKKKYK QEKAKIASGD GPSRWVFFKK LESLIGGNTI  180
TKSSEKAPMG VLVNSRLNEH KRQAKGTTQI LQQGDLKRSS DSMRWHFRKR SASETESESD  240
PEPEPSPDSA ESLPPPQASQ PLAFQLPKRL KVDKSGGSGV AEVAKAILGF TEAYEKAETA  300
KLKLMMELEK ERMKFAKEME LQRMQFLKTQ LEITKNNQEE ERSRRGGERR IVDDDDDDDH  360
RNVKNNGDVS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216229KRSSDSMRWHFRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011582m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529210.0AK352921.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392724.10.0trihelix transcription factor ASIL1
SwissprotQ9SYG21e-171ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLV4JX480.0V4JX48_EUTSA; Uncharacterized protein
STRINGXP_006392724.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.11e-1296B-interacting protein 1-like 1