PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011633m
Common NameEUTSA_v10011633mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 340aa    MW: 39689.5 Da    PI: 6.3341
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011633mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.7e-072568340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+++ +k++ +fC +++ +lC+ C ++ H+       H++v
  Thhalv10011633m 25 QRDCELCLNKHAVWFCASDDAFLCHLCDESVHSAnqvatkHERV 68
                     678*****************************667788888766 PP
2CCT67.34.1e-23291334144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++ RY++Krk+R+FeKkirYe+RK++A++RpR+KGrFv+++
  Thhalv10011633m 291 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 334
                      9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7982370IPR000315B-box-type zinc finger
SMARTSM003364.0E-82370IPR000315B-box-type zinc finger
PfamPF006432.0E-62668IPR000315B-box-type zinc finger
CDDcd000218.28E-102870No hitNo description
PROSITE profilePS5101715.944291333IPR010402CCT domain
PfamPF062031.1E-17291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MKGHQNIKFQ RKIMISEHQE DVKAQRDCEL CLNKHAVWFC ASDDAFLCHL CDESVHSANQ  60
VATKHERVCL RTNEISIRVL QGTTSKPVWH SGFRRKARTP RARCEKKPQE NIDDERRRED  120
PRVPEIGGQR MFFIPETNDD DGDEDLTSLV PEFHGFIEME FFLSNYDGSE ETTRPFNFED  180
EIDAMEDLCY NEDGEAKTDG DKACPDQSLM SSKNNVIAIT TKKEEMEDYE SNAKQMNMLL  240
RLNYENVIAA WDKQESPRGA PINETEFNNI STFQLVPPGT EEKKMSSKSE REARVWRYRD  300
KRKNRLFEKK IRYEVRKVNA DKRPRMKGRF VRRSLASET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011633m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530060.0AK353006.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393308.10.0zinc finger protein CONSTANS-LIKE 8
SwissprotQ9M9B31e-170COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLE4MWV90.0E4MWV9_EUTHA; mRNA, clone: RTFL01-13-C12
TrEMBLV4KHE50.0V4KHE5_EUTSA; Uncharacterized protein
STRINGXP_006393308.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-160B-box type zinc finger protein with CCT domain