PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011650m
Common NameEUTSA_v10011650mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 327aa    MW: 35584.9 Da    PI: 9.3235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011650mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-09754345
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                      W+ eE++ + +a++++  +      +W++ a++++ +++ +++k ++q
  Thhalv10011650m  7 TWSREEEKAFENAIAMHCVEeeltddQWTKMASMVP-TKSSEEVKKHYQ 54
                     6****************999****************.***********9 PP
2Myb_DNA-binding38.72.2e-12141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Thhalv10011650m 141 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 185
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.995361IPR017884SANT domain
SMARTSM007179.1E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-5658IPR009057Homeodomain-like
PfamPF002491.1E-7754IPR001005SANT/Myb domain
CDDcd001675.09E-8757No hitNo description
SuperFamilySSF466897.18E-9864IPR009057Homeodomain-like
PROSITE profilePS5129416.873134190IPR017930Myb domain
SuperFamilySSF466898.61E-17136191IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-17138188IPR006447Myb domain, plants
SMARTSM007172.3E-10138188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-11139184IPR009057Homeodomain-like
CDDcd001672.15E-9141186No hitNo description
PfamPF002498.3E-11141185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
METVAVTWSR EEEKAFENAI AMHCVEEELT DDQWTKMASM VPTKSSEEVK KHYQILLEDV  60
KAIENGHVPL PRYHRKGIAI DEAAAAATSP ANRDGHSSGG SGSSEKKPNH GASGTSSSNG  120
GGGGGGRSGS RAEQERRKGI PWTEEEHRLF LLGLDKFGKG DWRSISRNFV ISRTPTQVAS  180
HAQKYFIRLN SMNRDRRRSS IHDITTVNNQ APAVTGQQQQ QQQQQQVVKH RPAQPQPQPQ  240
PQPQPPHHPG ATMAGLGMYG GAPMGQPIIA PPDHMGSAVG TPVMLPPPMV PHHHHHHHHL  300
GVAPYPVPAY PVPPIPQQHP APSTMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-148771177RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011650m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393319.10.0transcription factor MYBS1
TrEMBLV4JYM20.0V4JYM2_EUTSA; Uncharacterized protein
STRINGXP_006393319.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-123MYB family protein