PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011760m
Common NameEUTSA_v10011760mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 225aa    MW: 25956.1 Da    PI: 4.413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011760mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-1533120398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      k+ + +++ k++++ +p +f+ + g  ++ + t+t+e++ g + ++++  ++ ++++++++GW+eF+ka+ L  g f+ F+++g+s+f  +v +
  Thhalv10011760m  33 KIIL-HSTIKEKMMKIPARFV-RLG--PKLTDTVTIETPAGFKRSIRI--KRVGDEVWFENGWSEFAKAHSLSKGHFLYFYYKGNSSF--RVVI 118
                      4443.45566677********.565..45777****************..9**********************************999..8888 PP

                      E- CS
               B3  97 fr 98 
                      f+
  Thhalv10011760m 119 FD 120
                      87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-2028122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1930121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-1630120No hitNo description
PROSITE profilePS5086311.98430122IPR003340B3 DNA binding domain
SMARTSM010192.4E-1631122IPR003340B3 DNA binding domain
PfamPF023623.0E-1333120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKTSRRSSVR STSAAYQRRL EPEPKPALDR FMKIILHSTI KEKMMKIPAR FVRLGPKLTD  60
TVTIETPAGF KRSIRIKRVG DEVWFENGWS EFAKAHSLSK GHFLYFYYKG NSSFRVVIFD  120
VSALEIDYPL DKVDVIESDD DDDDEVMEVM DLEEEEEEEE EGFSGVESSD DDSCSVIDLE  180
EMLKKKPRVN IKSEQITTDD VEEIDSMDDI EEYEIALTRR KRSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011760m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393254.11e-161B3 domain-containing protein At1g49475
SwissprotQ9XIB43e-81Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLV4JYG51e-160V4JYG5_EUTSA; Uncharacterized protein
STRINGXP_006393254.11e-160(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-65B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]