PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011796m
Common NameEUTSA_v10011796mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 196aa    MW: 21030.6 Da    PI: 9.5917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011796mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192575256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+ta++Aa+a++aa+++++g+
  Thhalv10011796m 25 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAQQAARAYDAAAREFRGA 75
                     59*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-352588IPR001471AP2/ERF domain
CDDcd000184.18E-202582No hitNo description
SuperFamilySSF541715.56E-222583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-322582IPR001471AP2/ERF domain
PfamPF008471.0E-132574IPR001471AP2/ERF domain
PROSITE profilePS5103224.1052582IPR001471AP2/ERF domain
PRINTSPR003673.8E-112637IPR001471AP2/ERF domain
PRINTSPR003673.8E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTKMGFKPDS NPSPNPNESN AKEIRYRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAQQ  60
AARAYDAAAR EFRGAKAKTN FPTFLELNAA KDGGFARSPS QSSTVDSVSP TSARLVTPPQ  120
LELSLGGGGG GACYQIPVAR RPVYFYNMTT FPAAAAATCG VQSESDSSSV VDFECGAEKK  180
YRPLDLDLNL APPAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2021821072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011796m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4997160.0AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392820.11e-142ethylene-responsive transcription factor 4
SwissprotQ9MAI52e-68ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLQ8S2S71e-141Q8S2S7_EUTHA; Ethylene responsive element binding factor 4-like protein
TrEMBLV4MFN61e-141V4MFN6_EUTSA; Uncharacterized protein
STRINGXP_006392820.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-43ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]