PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011820m
Common NameEUTSA_v10011820mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YC
Protein Properties Length: 177aa    MW: 20451.3 Da    PI: 5.8238
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011820mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.46.9e-56311351102
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlr+wlh+eenkrrtl+k+diaaa++rtd+fdf
  Thhalv10011820m  31 QLHMFWANQmqeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWLHTEENKRRTLQKNDIAAAISRTDVFDF 124
                      799*****988889******************************************************************************** PP

            NF-YC  92 lvdivprdelk 102
                      lvdi+prdelk
  Thhalv10011820m 125 LVDIIPRDELK 135
                      ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.28E-3513125IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.2E-3845117IPR009072Histone-fold
PfamPF008086.0E-2253116IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEHSEEGVME YAPHPPRAQQ QAHHFHQQQQ QLHMFWANQM QEIEQTTDFK NHTLPLARIK  60
KIMKADEDVR MISAEAPVIF AKACEMFILE LTLRAWLHTE ENKRRTLQKN DIAAAISRTD  120
VFDFLVDIIP RDELKEEGLG VTKGTIPTLV GSPPYYYLQQ QQQQQQGLMP WSTGEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5739131395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011820m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971421e-132KC797142.1 Brassica napus transcription factor subunit NF-YC2 (NF-YC2) gene, complete cds; kinetoplast.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392559.11e-130nuclear transcription factor Y subunit C-2
SwissprotQ8LCG77e-90NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLV4JWL31e-129V4JWL3_EUTSA; Uncharacterized protein
STRINGXP_006392559.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-89nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]