PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10011866m
Common NameEUTSA_v10011866mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 127aa    MW: 14634.5 Da    PI: 5.2743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10011866mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.3e-12858247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++WT+eE+e lv +++++G g Wk+I           gR   ++k++w+++
  Thhalv10011866m  8 NKWTKEEEEALVAGIAKYGAGKWKKILVDPEfapqlSGRDNINLKDKWRNL 58
                     69*************************9999999*99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.653163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-14362IPR009057Homeodomain-like
SuperFamilySSF466893.45E-16561IPR009057Homeodomain-like
SMARTSM007172.8E-7661IPR001005SANT/Myb domain
PfamPF002495.8E-8858IPR001005SANT/Myb domain
CDDcd116607.91E-19960No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEEHRKNNKW TKEEEEALVA GIAKYGAGKW KKILVDPEFA PQLSGRDNIN LKDKWRNLTK  60
TQALNESSPN NSSDMSNESR FDAMVFEAIS TINDENGSYY SRILSFIEVK RIYLSLCFSW  120
FLYDIP*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10011866m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392696.22e-73telomere repeat-binding factor 4
SwissprotF4I7L13e-25TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLV4KRM73e-88V4KRM7_EUTSA; Uncharacterized protein
STRINGXP_006392697.15e-89(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-27MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]