PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012052m
Common NameEUTSA_v10012052mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARR-B
Protein Properties Length: 435aa    MW: 48608.9 Da    PI: 4.5572
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012052mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.71.5e-19246303155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                      kpr++Wt e+ e+F++a++ LGG+ k  Pk +l++   m++ gLt++++ SHLQkYR+
  Thhalv10012052m 246 KPRVVWTGEIQEKFLKAIDLLGGPRKSNPKLLLKClkeMGITGLTRSNISSHLQKYRI 303
                      79****************************98764333899****************7 PP
2Response_reg54.47.2e-19391451107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vd + + + ++++++++  + ev+  +d+eea+  l  +++++++++ D  mp+++G+++lk i e+  +lp++++++ ++ +++lea   
  Thhalv10012052m  39 VLVVDSNFVTLLNMKNIMQQYAF-EVTIYADAEEAISFLtnCKHRINIVIWDYHMPEINGIQALKIIGEKM-DLPVVIMSDDDQVDTVLEATMN 130
                      89*********************.***************777888**********************7755.8********************* PP

                      TESEEEESS--HHHH CS
     Response_reg  93 GakdflsKpfdpeel 107
                      Ga  f +Kp+ ++ l
  Thhalv10012052m 131 GACYFAVKPVVEQVL 145
                      *********766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.98E-2636161IPR011006CheY-like superfamily
SMARTSM004488.6E-1437149IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23004.7E-2737189No hitNo description
PROSITE profilePS5011033.98738153IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-1639146IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.73E-1740153No hitNo description
SuperFamilySSF466892.33E-12244306IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-18245306IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-16246303IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MLVGNMTEGG DETRISQRES SEIEGLNSLP NEFPGSTNVL VVDSNFVTLL NMKNIMQQYA  60
FEVTIYADAE EAISFLTNCK HRINIVIWDY HMPEINGIQA LKIIGEKMDL PVVIMSDDDQ  120
VDTVLEATMN GACYFAVKPV VEQVLANIWQ HILRQRMMSK TVLIPAPVHV DLVQSHDDGS  180
KQDKDDSMTM VNQDNSEQSI DKIEENPGMA QTGELGSGLV QSDGLDQDSD ESKTTNQDMG  240
KKKVRKPRVV WTGEIQEKFL KAIDLLGGPR KSNPKLLLKC LKEMGITGLT RSNISSHLQK  300
YRISIEEEKI PQQMEEDDWS PPYQPMSLLG ANIVHTGTSA LMNGQAFYPL QENQYQNGYN  360
MTVNNNQFVS APMHNATSSL MSGQAVYLVQ ENQYPNGYNM AVNNNQFVST HMHTATSSLM  420
NGQAIFPLQE NPQPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012052m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144989.11e-151PREDICTED: putative two-component response regulator ARR19
RefseqXP_013614206.11e-151PREDICTED: putative two-component response regulator ARR19
RefseqXP_022560240.11e-151putative two-component response regulator ARR19
RefseqXP_022566338.11e-151putative two-component response regulator ARR19
TrEMBLV4MH040.0V4MH04_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006393295.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.18e-73response regulator 19