PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012073m
Common NameEUTSA_v10012073mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 178aa    MW: 20091.6 Da    PI: 10.5064
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012073mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind552.3e-17131033100
                      HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
     HSF_DNA-bind   3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                      l ++y++++d++++++isws++++ fv+ ++e++ ++ + k F  s+f+ F+  L+ Yg++k+k++++         eF +++F +g+  l+++
  Thhalv10012073m  13 LDRIYKLVDDPSTDSIISWSKSNKGFVIRNQEKLIRRKIYKRFFCSSFKTFISRLKHYGYSKIKSSDGL-------REFGNENFVRGQPMLMKE 99 
                      6789******************************99999999999**********************87.......9*************9999 PP

                      XXXX CS
     HSF_DNA-bind  97 ikrk 100
                      ++ k
  Thhalv10012073m 100 MHIK 103
                      8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-248103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-71235IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-201398IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-1614101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-1915100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.6E-76375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKDRPDFPVP VILDRIYKLV DDPSTDSIIS WSKSNKGFVI RNQEKLIRRK IYKRFFCSSF  60
KTFISRLKHY GYSKIKSSDG LREFGNENFV RGQPMLMKEM HIKTVMKRLV RSPLSNARIE  120
CPCPSVNPNT TPSIPLTTAI VVFNTCSTGI ICISDVTSPL ASFLTAPAVR EITILSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012073m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886167.15e-50heat stress transcription factor A-4a
TrEMBLV4KLB31e-126V4KLB3_EUTSA; Uncharacterized protein
STRINGXP_006393441.11e-127(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.13e-30HSF family protein