PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10012087m

Common Name

EUTSA_v10012087mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

MYB_related

Protein Properties

Length: 86aa MW: 9806.33 Da PI: 9.6581

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10012087m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.6e-09	6	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 r++WT+eE+ l+ ++ ++G g W I + + R+ ++k++w++ + Thhalv10012087m 6 RNKWTAEEEGALLAGICKHGAGKWLNILEDPEfrpqlLYRSNIDLKDKWRNMK 58 79************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.506	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-14	3	60	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-12	4	65	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-4	5	60	IPR001005	SANT/Myb domain
CDD	cd11660	2.10E-15	8	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MVGYRRNKWT AEEEGALLAG ICKHGAGKWL NILEDPEFRP QLLYRSNIDL KDKWRNMKIK 60 EKSMTQTLDS ASISISPCKD FAFSK*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10012087m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305374.1	2e-31	telomere repeat-binding factor 5 isoform X2
Swissprot	F4IEY4	8e-23	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	V4KFR0	4e-57	V4KFR0_EUTSA; Uncharacterized protein
STRING	XP_006392698.1	7e-58	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16580	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.1	3e-25	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thhalv10012087m
Entrez Gene	18011384

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]